PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA06g24380
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family C2H2
Protein Properties Length: 148aa    MW: 16760.3 Da    PI: 9.8357
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA06g24380genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000116082123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                ++C++Cg+ F     L  H+r+H
  CA06g24380 60 HQCSYCGEEFALGQALGGHMRKH 82
                79********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.26E-71782No hitNo description
PfamPF139129.2E-121943IPR007087Zinc finger, C2H2
PROSITE profilePS501579.911946IPR007087Zinc finger, C2H2
SMARTSM003550.451941IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-45583IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.7436087IPR007087Zinc finger, C2H2
PfamPF139123.1E-96084IPR007087Zinc finger, C2H2
SMARTSM003550.0536082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 148 aa     Download sequence    Send to blast
MANCVSILEK NSSLARRFYE CKTCKRQFES FQALGGHRAS HKKPKLEKGS DSIKSKTKKH  60
QCSYCGEEFA LGQALGGHMR KHRDKLMEKQ EEKNHTKCKS DDDLLKAEKK SKSNSDKKLF  120
LDLNLTPYEN DLMLGIIPAF TVVHSLL*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016576245.12e-90PREDICTED: zinc finger protein 667-like
SwissprotQ9SLD41e-26ZAT11_ARATH; Zinc finger protein ZAT11
TrEMBLM1CZ269e-74M1CZ26_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000779333e-73(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.12e-32C2H2 family protein